AuthorWrite something about yourself. No need to be fancy, just an overview. ArchivesCategories |
Back to Blog
The Valiant free instals1/24/2024 Any features of type other than CDS and UTR are ignored. The features file should match the assembly of the target reference genome. The files should only contain features for one transcript per gene (the gene_id and transcript_id attributes are required to perform this check). The features file (SGE-only gff option) is required to detect exonic regions in the targeton, and should therefore be provided in most circumstances. When running the tool in a container, the directory containing both files should therefore be mounted. The reference directory should contain both the FASTA file and its index e.g., if the FASTA file is named genome.fa, a genome.fa.fai file should also be present in the same directory. reference sequence retrieval quality check file (CSV, SGE-only).codon table with frequencies (CSV, optional).See the command line interface section for the full list and a more detailed description of the parameters. Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments.īarbon L, Offord V, Radford EJ, Butler AP, Gerety SS, Adams DJ, Tan HK, Waters AJ.īioinformatics. Please cite this paper when using VaLiAnT for your publications:
0 Comments
Read More
Leave a Reply. |